okies, I get first whack atcha! heh heh (don't worry, Boss has me on a leash lately, so I'll be nice! or at least as close to it as I can!!
)
Yes, you can convert.
Lots of people fill in the deeper areas but i don't see any real reason why.
[Edit] ah, okay, SECOND whack; I see our resident lil Queenie stomped on by...
I would say you don't need a new liner but I'd make sure the one you got is cleaned well. Now, if your liner is aging, might be a good time to consider a new one just so you can get those 20+ years while you're still young!
Bottom drain is no issue and you CAN use it but it's not necessary.
Plumbing for your pool MIGHT be an issue if there's standing water in them all the time and no movement; for this reason alone you could use it for aux current, but I'd make sure any wildlife can't get into the plumbing. Again, peeps with pools are needed NOW!
I'd not use the pool pump as most pond pumps are designed for 24/7 use and yeah, that's how you should use it. There's a reason.
Not sure re the skimmer as I don't have a pool nor a skimmer on my pond; others can chime in. Again, you don't need one for a pond but others see it as beneficial. Sort of depends on how much falls into your pool/pond.
I'd not set up any pond where you expect wildlife to live that you wish to see. If all you want is a natural pool, then yes, you can, but you'll have a swampy mess, eventually as there's also no water movement. Now, if you move the water, you get a pass, at least for a while. In the end, a filter keeps the water clear enough for you to see and the fish to thrive. That last part; very important or we'll be seeing a LOT of you in the Newbie Forum...
Think about a bog filter; it'll make you smile when your realize there's practically NO maintenance once it's established. Just thinning of plants periodically. Search the forums here, take a looksee; you'll note a lot of us are in the BFC. Again, for a reason.
That should get you started writing out your next set of questions...
[edit] I guess I get SECOND whack as I see our resident lil Queenie stomped on past...