When I was considering filtration and such, I ran across Addy's thread and used that as the basis for my bog with input from another website. What I did was to dig down 3 feet and lay my 4" corrugated input drain pipe with the saw slits there. I used a chain saw for the cuts, which go halfway through the pipe, about every 4 inches of length. Total length of my bog pipe is about 5', gallonage about 300, dimensions 3'x4'x36" deep. Pond gallonage is about 2500, with the bog dropping water to a short, shallow river which drops its flow to the pond.
First layer of coverage was about a foot of 4-6" smooth river rock, followed by another foot or so of 2" river rock, then I filled the rest with pea gravel. At the pump, I have half inch plastic mesh surrounding my submersible pump to keep large debris from entering the system, and the pump sits a foot above the bottom. The pump sends the water to a falls and past, to the bottom of the bog for up-flow filtration.
Like Addy, haven't had any problems with the water clarity nor flow. The plants in the bog are larger than in the pond, so I'd assume the nutrients are being held and/or used primarily in the bog area. I have had some string algae but it tends to dissipate once full summer arrives. I'm crediting the plants and fish for lessening the algae.
Anyway, I'm glad I found Addy's thread and went this way as for 3 years now, I've had no maintenance re filtration and water conditions. For me, mimicking nature seemed both easiest and best.