in a natural stream or river there is a steady flow of fresh water with a good current running across them in a pond like ours, once again we are circulating the same body of water over and over again. the rocks on the bottom of a pond allow fish waste plant matter and such to accumulate between and below them, this debris decays and releases toxins into the water. this is one more reason for a good bio filter. if your building a stream that is where you want to confine your rocks too.. they will build bacteria and have that steady flow across them to add additional bio filtering, and water polishing to boot.