@Stephen1212 I know that you are worried about your fish — I would be, too — but I’m confused and could use some clarification.
Are you asking for us to confirm what you are seeing under the scope? Or are you asking us what you should do to treat your fish?
Five thousand liters comes out to around 1500 gallons. How deep is your pond? When I plugged in the dimensions you gave (minus a depth), it came out to maybe 2’ deep. Does this sound right?
I am not in the least bit versed in fish diseases, so couldn’t begin to tell you what you should do. A few random organisms, alone don’t indicate an infection, but you say that all of your fish are flashing. This does indicate that something is going on. For one thing, I think your pond is way overstocked, which would be a cause for stress and poor water quality — the main ingredients for sick fish. I think the first thing you need to do is get some of those fish out of there! As far as treatment, maybe
@MitchM can recommend the best way to medicate, but you need to start by reducing that fish load!
Can you give us the exact number results you are getting for your water tests? How long has the pond been running? A few pictures would be helpful.