Replying to Stonecreek1... if you are still losing fish.. I would try the Dimilin.
I did not lose any more fish after treating mine with the Dimilin. All my fish are healthy again and pretty fishies.
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@Ra'mona I think your diagnosis of columnaris is wrong , the fish with the swollen gills and exessive mucus more than likely is suffering from either Gyrodactylus [skin flukes or Dactylogyrus[ gill flukes].
@stonecreek1 please note the way the muscus has caused the gill casings to raise and the exessive mucus down its body which are a classic signes of flukes and that is what I strongly believe you should treat for.
In our 29 years of keeping koi I've seen fluke infestations in my own and other peoples ponds on several occaisions. but am out of my depth when it comes to treating fry as the chemcals may well kill them.
Fluke M by Kusuri is what I would treat adult koi with , you can also treat with Malachite and formalin the amount dependant on strength of the slolution, Potasium Permanganate can also be used and last but not least superverm an organophosphate treatment that clears koi of flukes [but kills its cousin the goldfish..
What filtration do you have on the stock tank ?
My other thought is why so many tails with no signs of any other fin damage it may be that your koi babies are either being caught by the pipe of your filter if you have one on the tank, or you have a cannibal in the tank as young fry do predate smaller fry.
So one of your largest fry may well be nipping tail fins.
What temperature are you doing water changes at if its straight cold water please stop doing that and try to match the temperatures of the stock tank when doing water changes [always] otherwise you could cause thermal shock to your fry which stresses them out no end
Dave