You can find way more about bottom drains by Googling them then I could tell you here, but the main advantages of them is that they can gravity feed the sludge on the bottom of your pond to your filter system, without blending it up by going through a pump. By doing this it can be more easily removed. If you plumb a bottom drain, of any sort, through a pump before catching and removing the sludge in some sort of filter mechanism, you defeat the whole advantage of having a bottom drain.
Think of a bottom drain like having a vacuum permanently running in the very bottom of your pond (where the majority of the sludge accumulates).
The biggest problem I have seen with
retrofit bottom drains is the way they most often get plumbed, and that is to run the drain line up and over the edge of the pond above the water line. The problem with this is, once any air gets trapped in the pipe above the water line (and it eventually will), it will break the siphon and the gravity feed action of the water will no longer work, and it will be very hard to get the air out because of the large diameter pipe that bottom drains need to be to work properly.
The picture below shows the correct way a retrofit bottom drain should be installed (through a bulkhead),,,and an alternate (wrong) way.